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that's not related to not having LEF. I assume a reader bug or maybe the specification got updated. I have limited access to DEF sample and the variety of flavours is overwhelming, so I'm depending on your inputs. Could you provide a (reduced) sample DEF that allows reproducing that issue?
And if possible, please file an issue on GitHub: https://github.com/klayoutmatthias/klayout/issues.
I think I can reproduce the issue and tried to fix. When reading the spec again I assume there is another issue hidden behind that one: if the wire is continued, it needs to be continued at the point of the via. See my comments on GitHub.
I'll try to patch this into the upcoming 0.24.10 version - I hope you find a way to verify this.