Build klayout inside conda environment

Grandement

Hello,
Has someone experience with building klayout inside a conda environment?
I am trying to build it on a Linux redhat 7 system with python 3.8.1 and qt5 but was not successful. Maybe someone can share a requirement list which works for him/her?

I tried different package combination which end up with different compiling issues. Maybe it is not possible to build it inside a conda environment?

Best regards

Matthias

Could you be a bit more specific? Like indicating what errors you encounter.

kazzz is using the Anaconda environment to generate builds on MacOS and I did so experimentally on Windows with MSVC 2017, so basically it should work. I have no experience however on RedHat 7. On Linux I still prefer the system package approach. My experience with external package managers on Linux wasn't always encouraging.

For CentOS 7 I am providing RPM's, so maybe you can simply use those.

Matthias

sekigawa

As Matthias mentioned above, I could successfully build KLayout from its source using Anaconda3 on macOS(Catalina, Big Sur, Monterey) and Linux Mint 19.
Please refer to the following for the more detailed environments.
I hope this info helps you.

Kazzz-S

[macOS]

(0) (base) MacBookPro2{sekigawa}(1)$ uname -a
    Darwin MacBookPro2.local 19.6.0 Darwin Kernel Version 19.6.0: Thu Jan 13 01:26:33 PST 2022; \
    root:xnu-6153.141.51~3/RELEASE_X86_64 x86_64

(1) Anaconda3 Installation Path
    /Applications/anaconda3/ (can be a symbolic to  ---> $HOME/opt/anaconda3/)

(2) (base) MacBookPro2{sekigawa}(2)$ conda --version
    conda 4.11.0

(3) The three major modules for building KLayout from its source
    qt      5.9.7   h468cd18_1
    python  3.8.2   hc70fcce_0
    ruby    2.5.1   h7107397_0  (must be installed separately; causes the python downgraded to 3.8.2)

(4) The setup for Anaconda3 build
    (base) MacBookPro2{sekigawa}(3)$ ./build4mac.py -q qt5ana3 -p ana3 -r ana3 -c

    ### You are going to build KLayout
        for  <Catalina 19.6.0 x86_64>
        with <Qt=Qt5Ana3, Ruby=RubyAnaconda3, Python=PythonAnaconda3>...

    {   'bin': 'qt5Ana3.bin.macos-Catalina-release-Rana3Pana3',
        'build': 'qt5Ana3.build.macos-Catalina-release-Rana3Pana3',
        'build_cmd': './build.sh',
        'check_cmd_only': True,
        'debug_mode': False,
        'deploy_tool': '/Applications/anaconda3/bin/macdeployqt',
        'logfile': 'qt5Ana3.build.macos-Catalina-release-Rana3Pana3.log',
        'make_options': '--jobs=4',
        'no_qt_bindings': False,
        'no_qt_uitools': False,
        'project_dir': '/Users/sekigawa/GitWork/klayout',
        'pyinc': '/Applications/anaconda3/include/python3.8',
        'pylib': '/Applications/anaconda3/lib/libpython3.8.dylib',
        'python': '/Applications/anaconda3/bin/python3.8',
        'qmake': '/Applications/anaconda3/bin/qmake',
        'rbinc': '/Applications/anaconda3/include/ruby-2.5.0',
        'rblib': '/Applications/anaconda3/lib/libruby.2.5.1.dylib',
        'rpath': '@executable_path/../Frameworks',
        'ruby': '/Applications/anaconda3/bin/ruby'}
    time \
      ./build.sh  -release \
      -qt5 \
      -qmake /Applications/anaconda3/bin/qmake \
      -bin   qt5Ana3.bin.macos-Catalina-release-Rana3Pana3 \
      -build qt5Ana3.build.macos-Catalina-release-Rana3Pana3 \
      -rpath @executable_path/../Frameworks \
      -with-qtbinding \
      -option --jobs=4 \
      -ruby   /Applications/anaconda3/bin/ruby \
      -rbinc  /Applications/anaconda3/include/ruby-2.5.0 \
      -rblib  /Applications/anaconda3/lib/libruby.2.5.1.dylib \
      -python /Applications/anaconda3/bin/python3.8 \
      -pyinc  /Applications/anaconda3/include/python3.8 \
      -pylib  /Applications/anaconda3/lib/libpython3.8.dylib  2>&1 | tee qt5Ana3.build.macos-Catalina-release-Rana3Pana3.log; \
    test ${PIPESTATUS[0]} -eq 0

==========================================================================================================

[Linux Mint 19]

(0) (base) sekigawa@LM19:~/GitWork/klayout$ uname -a
    Linux LM19 5.4.0-100-generic #113~18.04.1-Ubuntu SMP Mon Feb 7 15:02:59 UTC 2022 \
    x86_64 x86_64 x86_64 GNU/Linux

(1) Anaconda3 Installation Path
    $HOME/anaconda3/

(2) (base) sekigawa@LM19:~/GitWork/klayout$ conda --version
    conda 4.11.0

(3) The three major modules for building KLayout from its source
    qt      5.9.7   h5867ecd_1
    python  3.8.12  h12debd9_0
    ruby    2.5.1   haf1161a_0 (must be installed separately; causes the python downgraded to 3.8.12)

(4) The initial parts of the dry-run
    (base) sekigawa@LM19:~/GitWork/klayout$ ./build.sh -dry-run | more
    Scanning installation ..

    Version Info:
        Version: 0.27.8
        Date: 2022-03-04
        Revision: cbd805f8e

    Using qmake: qmake

    Using Ruby interpreter: ruby
        Ruby library found: /home/sekigawa/anaconda3/lib/libruby.so.2.5.1
        Ruby headers found: /home/sekigawa/anaconda3/include/ruby-2.5.0 and\
                            /home/sekigawa/anaconda3/include/ruby-2.5.0/x86_64-linux
        Ruby installation is in:
        - /home/sekigawa/anaconda3/lib/libruby.so.2.5.1 (lib)
        - /home/sekigawa/anaconda3/include/ruby-2.5.0 (headers)
        - /home/sekigawa/anaconda3/include/ruby-2.5.0/x86_64-linux (arch headers)
        Ruby version code is 20501

    Using Python interpreter: python3
        Python library found: /home/sekigawa/anaconda3/lib/libpython3.8.so
        Python headers found: /home/sekigawa/anaconda3/include/python3.8
        Python extension suffix: .cpython-38-x86_64-linux-gnu.so
        Python installation is in:
        - /home/sekigawa/anaconda3/lib/libpython3.8.so (lib)
        - /home/sekigawa/anaconda3/include/python3.8 (includes)

    Features:
        Qt bindings enabled (Qt 5 API)
        Compilation caching is deactivated!
        Installation target: /home/sekigawa/GitWork/klayout/bin-release
        Build directory: /home/sekigawa/GitWork/klayout/build-release
        Building plugins: streamers tools

    Running qmake ..
    QMake version 3.1
    :
    :

filmartinelli

Hello, I am new to Klayout on Mac and I am facing some issues on the installation too! I have downloaded the anaconda package and I have followed the instructions specified in the readme file.
However, when launching Klayout I encounter the problem in the picture attached.

can someone help me solving it?

sekigawa

Hi,

Please provide some more information.

1. The name of the package you installed, for example,
   LW-klayout-0.27.13-macOS-Monterey-1-qt5Ana3-Rana3Pana3.dmg

2. The name of your macOS (version) and outputs of the uname -a command, for example,
   Monterey (12.6.2)

(base) MacBookPro2{sekigawa} ~ (1)% uname -a
Darwin MacBookPro2.local 21.6.0 Darwin Kernel Version 21.6.0: Sun Nov  6 23:31:16 PST 2022; root:xnu-8020.240.14~1/RELEASE_X86_64 x86_64

3. Your Anaconda3 installation path and version details, for example,
   $HOME/opt/anaconda3/

(base) MacBookPro2{sekigawa} ~ (2)% python3
Python 3.8.15 (default, Nov 10 2022, 13:17:42)
[Clang 14.0.6 ] :: Anaconda, Inc. on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>>

Thanks,
Kazzz-S

sekigawa

Hi,

I conducted an experiment based on three assumptions.

[Assumptions]
  (1) You are using macOS 13.1 Ventura (the latest one) with the x86_64 architecture (Intel Mac).
  (2) You have installed "LW-klayout-0.27.13-macOS-Monterey-1-qt5Ana3-Rana3Pana3.dmg".
  (3) The python version of your Anaconda3 is NOT 3.8.x, but another like 3.9.y.

[My Ventura (virtual machine)]
  (base) Ventura1{kazzz-s} lib (1)% uname -a
  Darwin Ventura1.local 22.2.0 Darwin Kernel Version 22.2.0: Fri Nov 11 02:08:47 PST 2022;
         root:xnu-8792.61.2~4/RELEASE_X86_64 x86_64

[My Anaconda3 setup]
  (base) Ventura1{kazzz-s} /Applications (2)% pwd
  /Applications

  (base) Ventura1{kazzz-s} /Applications (3)% ll | grep ana
  lrwxr-xr-x   1 kazzz-s  admin     51 Oct 29 16:57 Anaconda-Navigator.app -> /Users/kazzz-s/opt/anaconda3/Anaconda-Navigator.app
  lrwxr-xr-x   1 kazzz-s  admin     28 Jul 15  2021 anaconda3 -> /Users/kazzz-s/opt/anaconda3
  drwxr-xr-x   3 kazzz-s  admin     96 Dec 26 10:24 klayout-ana3.app  <=== I've renamed the application bundle.

  (base) Ventura1{kazzz-s} lib (4)% python3
  Python 3.8.15 (default, Nov 10 2022, 13:17:42)
  [Clang 14.0.6 ] :: Anaconda, Inc. on darwin
  Type "help", "copyright", "credits" or "license" for more information.
  >>>

[With faulty python3.8.dylib]
  (base) Ventura1{kazzz-s} lib (5)% pwd
  /Users/kazzz-s/opt/anaconda3/lib

  (base) Ventura1{kazzz-s} lib (6)% ll | grep python
  drwxr-xr-x   223 kazzz-s  staff       7136 Nov 23 06:43 python3.8
  -rwxrwxr-x     1 kazzz-s  staff    4200784 Nov 23 06:42 xxx-libpython3.8.dylib  <=== I have renamed this to hide!

Then, I got the same error as you.

[With correct python3.8.dylib]
  (base) Ventura1{kazzz-s} lib (7)% mv  xxx-libpython3.8.dylib  libpython3.8.dylib

  (base) Ventura1{kazzz-s} lib (8)% ll | grep python
  -rwxrwxr-x     1 kazzz-s  staff    4200784 Nov 23 06:42 libpython3.8.dylib  <=== This file name is correct!
  drwxr-xr-x   223 kazzz-s  staff       7136 Nov 23 06:43 python3.8

Then, KLayout starts normally as below.

I initially installed Anaconda3 on a Monterey virtual machine.
At that time, the Python version was 3.9.x. Then, when I added Ruby by conda install ruby,
the conda tool resolved the dependency and downgraded Python to 3.8.x.
After that, I upgrade the Monterey OS to Ventura OS.

If assumption (3) is correct, you need to downgrade the Python version to 3.8.x to use this particular DMG package.
Or you need to build KLayout from the source.
If you inform the output of the conda list | grep -E '(python|ruby)' command like:

(base) MacBookPro2{sekigawa} ~ (9)% conda list | grep -E '(python|ruby)'
ipython                   7.31.1           py38hecd8cb5_1
ipython_genutils          0.2.0              pyhd3eb1b0_1
msgpack-python            1.0.3            py38haf03e11_0
python                    3.8.15               h4319210_0  <=================
python-dateutil           2.8.2              pyhd3eb1b0_0
python-fastjsonschema     2.16.2           py38hecd8cb5_0
python-libarchive-c       2.9                pyhd3eb1b0_1
python-lsp-black          1.2.1            py38hecd8cb5_0
python-lsp-jsonrpc        1.0.0              pyhd3eb1b0_0
python-lsp-server         1.5.0            py38hecd8cb5_0
python-slugify            5.0.2              pyhd3eb1b0_0
python-snappy             0.6.1            py38hcec6c5f_0
python.app                3                py38hca72f7f_0
python_abi                3.8                      2_cp38    conda-forge
ruby                      3.1.2                h471fc2d_0  <=================

I can guide you on how to do it.

Regards,
Kazzz-S

sekigawa

Hello @filmartinelli,

Here are the second experiment results.

I have installed the latest Anaconda3 package to a Ventura virtual machine afresh.
The detailed steps I followed are captured in the attached ZIP file.
My above assumption (3) seems correct as below.
In the latest Anaconda3, Python 3.9.15 and Ruby 3.1.2 can coexist; you have not made mistakes.
:
Step-9: Final version check

(base) VenturaB{kazzz-s} /Applications (9)% conda list | grep -E '(qt|python|ruby)'
ipython                   7.31.1           py39hecd8cb5_1
ipython_genutils          0.2.0              pyhd3eb1b0_1
msgpack-python            1.0.3            py39haf03e11_0
pyqt                      5.15.7           py39he9d5cce_0
pyqt5-sip                 12.11.0          py39he9d5cce_0
pyqtwebengine             5.15.7           py39he9d5cce_0
python                    3.9.15               hdfd78df_0  <===== python=3.9.15
python-dateutil           2.8.2              pyhd3eb1b0_0
python-fastjsonschema     2.16.2           py39hecd8cb5_0
python-libarchive-c       2.9                pyhd3eb1b0_1
python-lsp-black          1.2.1            py39hecd8cb5_0
python-lsp-jsonrpc        1.0.0              pyhd3eb1b0_0
python-lsp-server         1.5.0            py39hecd8cb5_0
python-slugify            5.0.2              pyhd3eb1b0_0
python-snappy             0.6.1            py39hcec6c5f_0
python.app                3                py39hca72f7f_0
qt                        5.15.9               hecd8cb5_0
qt-main                   5.15.2               h719ae48_7  <===== qt=5.15.2 (core version)
qt-webengine              5.15.9               h90a370e_4
qtawesome                 1.0.3              pyhd3eb1b0_0
qtconsole                 5.3.2            py39hecd8cb5_0
qtpy                      2.2.0            py39hecd8cb5_0
qtwebkit                  5.212                h24dc246_4
ruby                      3.1.2                h471fc2d_0  <===== ruby=3.1.2
sphinxcontrib-qthelp      1.0.3              pyhd3eb1b0_0

Step-10: Check the library version

Last login: Fri Dec 30 21:33:27 on ttys000
(base) VenturaB{kazzz-s} ~ (10)% cd /Applications/anaconda3/lib
(base) VenturaB{kazzz-s} lib (11)% ll | grep python
-rwxrwxr-x     1 kazzz-s  wheel    4003956 Dec 30 21:18 libpython3.9.dylib  <===== 3.9
drwxr-xr-x   212 kazzz-s  wheel       6784 Dec 30 21:19 python3.9

When KLayout starts...

So, as I mentioned above, there are two expected options:
(1) Forcibly downgrade the Python version to 3.8.x.
(2) Build KLayout from the source with the correct/latest Python and Ruby version combinations.
I'm going to do (2).

The 3rd option shown below is risky, and I do not recommend it, however, ...
(3) !!! WARNING !!! Risky Test: Fake the library version

(base) VenturaB{kazzz-s} ~ (1)% cd /Applications/anaconda3/lib

(base) VenturaB{kazzz-s} lib (2)% ln -s libpython3.9.dylib libpython3.8.dylib  <===== Make this symbolic link

(base) VenturaB{kazzz-s} lib (3)% ll | grep python
lrwxr-xr-x     1 kazzz-s  wheel         18 Dec 30 21:45 libpython3.8.dylib -> libpython3.9.dylib  <=====
-rwxrwxr-x     1 kazzz-s  wheel    4003956 Dec 30 21:18 libpython3.9.dylib
drwxr-xr-x   212 kazzz-s  wheel       6784 Dec 30 21:19 python3.9

Kazzz-S

sekigawa

Hello @filmartinelli,

A happy new year, 2023.
I have built a new DMG for the Anaconda3 environment below on my Ventura virtual machine.
[Edit] This package can run in not only Ventura but also Monterey, Big Sur, and Catalina, having the same Anaconda3 setup.

(base) VenturaB{kazzz-s} /Applications (9)% conda list | grep -E '(qt|python|ruby)'
ipython                   7.31.1           py39hecd8cb5_1
ipython_genutils          0.2.0              pyhd3eb1b0_1
msgpack-python            1.0.3            py39haf03e11_0
pyqt                      5.15.7           py39he9d5cce_0
pyqt5-sip                 12.11.0          py39he9d5cce_0
pyqtwebengine             5.15.7           py39he9d5cce_0
python                    3.9.15               hdfd78df_0  <===== python=3.9.15
python-dateutil           2.8.2              pyhd3eb1b0_0
python-fastjsonschema     2.16.2           py39hecd8cb5_0
python-libarchive-c       2.9                pyhd3eb1b0_1
python-lsp-black          1.2.1            py39hecd8cb5_0
python-lsp-jsonrpc        1.0.0              pyhd3eb1b0_0
python-lsp-server         1.5.0            py39hecd8cb5_0
python-slugify            5.0.2              pyhd3eb1b0_0
python-snappy             0.6.1            py39hcec6c5f_0
python.app                3                py39hca72f7f_0
qt                        5.15.9               hecd8cb5_0
qt-main                   5.15.2               h719ae48_7  <===== qt=5.15.2
qt-webengine              5.15.9               h90a370e_4
qtawesome                 1.0.3              pyhd3eb1b0_0
qtconsole                 5.3.2            py39hecd8cb5_0
qtpy                      2.2.0            py39hecd8cb5_0
qtwebkit                  5.212                h24dc246_4
ruby                      3.1.2                h471fc2d_0  <===== ruby=3.1.2
sphinxcontrib-qthelp      1.0.3              pyhd3eb1b0_0

Download Info.
  Dropbox Link: https://www.dropbox.com/sh/e0kpwn20v2jtk4n/AAAgxR_xjnFg7WVFlhBapGKJa?dl=0
  File Name: LW-klayout-0.28.2-macOS-Ventura-2-qt5Ana3-Rana3Pana3.dmg
  File Size: 86,795,932 bytes
  MD5: b65a2dcf3949c8d1a1969ec43751ea83

Please note that the Dropbox link is temporal; I will delete it after a few weeks.
I hope this DMG will do for you.

Kazzz-S

Grandement

Hi Kazzz,

I am not a mac user but I could go a few step further with my initial issue by your posts.

I used following conda environment:

name: klayoutenv
channels:
  - conda-forge
dependencies:
  - python==3.9.15
  - qt==5.15.9
  - ruby==3.1.2
  - cxx-compiler==1.5.2

And following build command:
build.sh -j16 -python ~/.conda/envs/klayoutenv/bin/python3.9 -pyinc ~/.conda/envs/klayoutenv/include/python3.9 -pylib ~/.conda/envs/klayoutenv/lib/libpython3.9.so

The dry-run is successful but I cannot finish the compiling.

It crash with following errors:

g++ -Wl,-O1 -Wl,-rpath,<MY_PATH>/.conda/envs/klayoutenv/lib -Wl,-rpath-link,<MY_PATH>/.conda/envs/klayoutenv/lib -shared -Wl,-soname,libklayout_tl.so.0 -o libklayout_tl.so.0.28.0 tlAssert.o tlBase64.o tlColor.o tlClassRegistry.o tlCopyOnWrite.o tlDataMapping.o tlDeflate.o tlException.o tlExceptions.o tlExpression.o tlEvents.o tlGlobPattern.o tlHeap.o tlHttpStream.o tlInclude.o tlInternational.o tlLog.o tlObject.o tlProgress.o tlPixelBuffer.o tlResources.o tlScriptError.o tlSleep.o tlStaticObjects.o tlStream.o tlString.o tlTimer.o tlVariant.o tlFileUtils.o tlArch.o tlCommandLineParser.o tlUnitTest.o tlInt128Support.o tlXMLParser.o tlXMLWriter.o tlThreadedWorkers.o tlThreads.o tlDeferredExecution.o tlUri.o tlLongInt.o tlUniqueId.o tlList.o tlSList.o tlEquivalenceClusters.o tlUniqueName.o tlRecipe.o tlEnv.o tlHttpStreamQt.o tlWebDAV.o tlDeferredExecutionQt.o tlFileSystemWatcher.o moc_tlHttpStreamQt.o moc_tlDeferredExecutionQt.o moc_tlFileSystemWatcher.o  -lz <MY_PATH>/.conda/envs/klayoutenv/lib/libQt5PrintSupport.so <MY_PATH>/.conda/envs/klayoutenv/lib/libQt5Designer.so <MY_PATH>/.conda/envs/klayoutenv/lib/libQt5MultimediaWidgets.so <MY_PATH>/.conda/envs/klayoutenv/lib/libQt5Svg.so <MY_PATH>/.conda/envs/klayoutenv/lib/libQt5UiTools.a -L<MY_PATH>/.conda/envs/klayoutenv/lib -L/opt/conda/conda-bld/qt-main_1660123285207/_build_env/x86_64-conda-linux-gnu/sysroot/usr/lib64 -L/opt/conda/conda-bld/qt-main_1660123285207/_build_env/x86_64-conda-linux-gnu/sysroot/usr/lib -L/opt/conda/conda-bld/qt-main_1660123285207/_build_env/bin/../x86_64-conda-linux-gnu/sysroot/usr/lib64 <MY_PATH>/.conda/envs/klayoutenv/lib/libQt5Widgets.so <MY_PATH>/.conda/envs/klayoutenv/lib/libQt5Multimedia.so <MY_PATH>/.conda/envs/klayoutenv/lib/libQt5Gui.so <MY_PATH>/.conda/envs/klayoutenv/lib/libQt5Xml.so <MY_PATH>/.conda/envs/klayoutenv/lib/libQt5XmlPatterns.so <MY_PATH>/.conda/envs/klayoutenv/lib/libQt5Network.so <MY_PATH>/.conda/envs/klayoutenv/lib/libQt5Sql.so <MY_PATH>/.conda/envs/klayoutenv/lib/libQt5Core.so -lGL -lpthread    
<MY_PATH>/.conda/envs/klayoutenv/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../../../x86_64-conda-linux-gnu/bin/ld: cannot find -lGL: No such file or directory
collect2: error: ld returned 1 exit status
gmake[2]: *** [../../../build-release/libklayout_tl.so.0.28.0] Error 1

Do you have a clue why this happens? Or anybody else?

Thanks and regards

Grandement

sekigawa

Hi @Grandement,

The build messages show that "libGL.[so|a]" is not found when making libklayout_tl.so.
Have you installed it?

My current Anaconda3 environment in Linux Mint 19 is not up to date and is slightly different from my first comment.
More precisely, I have switched from Anaconda3's Ruby to the OS-bundled one, as shown below.

With this configuration, so far, I could build four generations of KLayout, namely KLayout 0.27.12, 0.27.13, 0.28.0,
and 0.28.2 (the latest).

Now, let's observe the dependency of libklayout_tl.so.
As you see below, libGL.so.1 under the system's library directory is dynamically linked.
In other words, it is not a part of Anaconda3 and should be installed separately.

(base) sekigawa@LM19:~/GitWork/klayout/bin-release$ pwd
/home/sekigawa/GitWork/klayout/bin-release

(base) sekigawa@LM19:~/GitWork/klayout/bin-release$ ll | grep _tl
lrwxrwxrwx  1 sekigawa sekigawa       23 12月 27 19:08 libklayout_tl.so -> libklayout_tl.so.0.28.2*
lrwxrwxrwx  1 sekigawa sekigawa       23 12月 27 19:08 libklayout_tl.so.0 -> libklayout_tl.so.0.28.2*
lrwxrwxrwx  1 sekigawa sekigawa       24 12月  4 18:51 libklayout_tl.so.0.27 -> libklayout_tl.so.0.27.13*
-rwxrwxr-x  1 sekigawa sekigawa   995472 11月  9 23:39 libklayout_tl.so.0.27.12*
-rwxrwxr-x  1 sekigawa sekigawa   995472 12月  4 18:51 libklayout_tl.so.0.27.13*
lrwxrwxrwx  1 sekigawa sekigawa       23 12月 27 19:08 libklayout_tl.so.0.28 -> libklayout_tl.so.0.28.2*
-rwxrwxr-x  1 sekigawa sekigawa  1040880 12月 19 23:50 libklayout_tl.so.0.28.0*
-rwxrwxr-x  1 sekigawa sekigawa  1040880 12月 27 19:08 libklayout_tl.so.0.28.2*

(base) sekigawa@LM19:~/GitWork/klayout/bin-release$ ldd libklayout_tl.so | grep GL
    libGL.so.1 => /usr/lib/x86_64-linux-gnu/libGL.so.1 (0x00007f4635855000)
    libGLX.so.0 => /usr/lib/x86_64-linux-gnu/libGLX.so.0 (0x00007f46333af000)
    libGLdispatch.so.0 => /usr/lib/x86_64-linux-gnu/libGLdispatch.so.0 (0x00007f46330f9000)

Next, hmmm, how did I install it? I do not remember. Let's use the Synaptic package manager tool to find it.
As shown in the image below, libklayout_tl.so was installed as a part of libgl1 package in the case of Linux Mint 19.

My suggestion is to follow similar steps.

Kazzz-S

sekigawa

Hi @Grandement,

Recently, I upgraded the Anaconda3 environment in Linux (Mint-19) and encountered the same problem as you:
cannot find -lGL: No such file or directory.

I've prepared a PowerPoint document to summarize the experiment results I have conducted so far.

The document does not provide a direct solution to your problem. However, I hope it will help you to some extent.

The attached Zip files are also embedded in the PowerPoint document.

Kazzz-S

dick_freebird

I don't know from "conda" but I've encountered problems with
applications "built inside environment", then having serious
limitations. In my case it was "snap" installations, which carry
a constraint (aka "sandbox") about what the app will and won't
see. "For your protection". Only nobody tells you.

For example, Ubuntu by default installs LibreOffice and TheGimp
by "snap". I only discovered this because neither would navigate
to my /projects directory which was mounted at install on a separate
physical disk. Base apps like File Manager and shell are fine. It's
all about that "environment" and its built in baggage.

Took me an evening to ream out all "snap" apps and functionality
but now my office and graphics apps (reinstalled by apt from
better sources) are fine.

sekigawa

Using scenario B's ana3B-2.sh wrapper Bash script, I was able to successfully build the latest version 0.28.5 in the latest Anaconda3 environment on Linux Mint 19.

Dependency on Anaconda3 is as follows.

Kazzz-S